I have created a heat map using WGCNA using R. But the heat map command is not showing the plot and there is no error. I have a large number of modules and traits. I am not sure if that is the reason. But I tried making it in HPC R and it still is not showing any result plot. Thank you!
The plot is probably being drawn to a device that you cannot view on a cluster. If you're using the
plotNetworkHeatmap function, say, try something like this:
png("plot.png", ...) #specify height, width, etc plotNetworkHeatmap(....) #call your function dev.off()
plot.png file over to your local machine to view the plot.