I am looking at how to build a
phylogenetic tree in
R from aligned genetic information (dna sequences). There are multiple tutorials on how to go about this task eg tutorial1, tutorial2 ("ape" docs), tutorial3, and there are many more. There appears to be quite a few steps with dependencies from multiple packages: eg. "ape", "phangorn", "phytools", "geiger". I would like to learn a minimal working example (mwe) for constructing a phylogenetic tree from a basic data-structure holding dna-strings.
Eg. I have a vector of nucleotide strings, and a separate vector for the 'names' of each string in the vector, how can I construct a phylogenetic tree from this information? (not a fasta file)