I am having trouble with some underlying questions about my project.
I have ran a Trinity tool to create a trinity.fasta file.
To determine some underlying questions, I used the utility asm_stats to gather some basic statistics.
I am just having some issues of calculating data.
Main genome scaffold N/L50: 7464/1.032 KB
Main genome contig N/L50: 7464/1.032 KB
Main genome scaffold N/L90: 14314/106
Main genome contig N/L90: 14314/106
Number of contigs (scaffold length):
907 (1 KB)
5 (5 KB)
With the data attached above, would my N50 and N90 length in BASE PAIRS so excluding the kb, be 7464 and 14314, respectively?
Would the number of contigs produced by this assembly be 7, since there are 7 different contigs produced or would it be 25,534?