I am currently working on a network pharmacology project where I am supposed to find out the possible diseases our drug might have an effect on. I am not a bioinformatics student, so my knowledge in the subject matter is very limited. I have all the targets and I am supposed to get the pathways associated with the targets. I used
STRING for the purpose.
- I got both
KEGGfunctional annotation and enrichment for my list of targets.
- I have to build a two-mode network
Question I am not very clear about
- the difference between enrichment and functional annotation and
- which data should be used for the next step.