I am working on a project and used the following command:
vsearch --derep_fulllength filtered_merged.fa -sizeout -relabel Uniq -output dereplicated_filtered_merged.fa
and got the following output:
87373926 nt in 203453 seqs, min 310, max 480, avg 352 Sorting 100% 10981 unique sequences, avg cluster 2.0, median 1, max 1287 Writing output file 100%
The output had provided me with the data that 10981 unique sequences have been identified. But I cant seem to identify how many reads of the most common sequence were present in the input data.
Any suggestions will be kindly appreciated!