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I am currently working on gene clustering based on co-expression pattern in mouse brain. The problem is I do not have some solid way to test my result. Are there any suggestions for databases indicating groups of genes that co-express (in mouse brain), or even better indicating some similarity metrics between each pair of genes based on expression pattern?

Also, I do want some databases for differentially-expressed genes ;)

PS: By "differentially-expressed" I am referring to a pair of genes whose expression patterns in a single individual differ.

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How about:

Other potential databases of interest:

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    $\begingroup$ Thanks for your great answer! The first two seems to be developmental expressions, while the third database is very helpful! This site looks quite good: gemma.msl.ubc.ca $\endgroup$
    – jasperhyp
    Feb 23 at 12:18

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