Here is microarray analysis where author uses GSE50632 series on an Agilent microarray GPL17660 platform with 4 eligible samples which I guess are GSM1224991, GSM1224992, GSM1224993 and GSM1224994 among which two are healthy and two are patient samples.
However I found the difference in the calculations-
Through GEO2R analysis table it is-
ID adj.P.Val P.Value t B logFC miRNA_ID_LIST SPOT_ID 148000 1.86e-02 5.82e-04 3.47 -0.402958 3.91 hsa-miR-3195
However in the paper the calculated values are far different specially logFC value.
What could be the reason for this?