Conversion of a multi-entry sdf to a multi-entry pdb file with open babel results in the loss of the compound names in the resulting PDB file. Why do you think this might occur and how can I resolve this issue.

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  • $\begingroup$ Add more information so people can help you better. Are you using the GUI or the command line version of ob? If GUI, what are your steps, and if CLI, what are your commands? $\endgroup$
    – Ram RS
    Mar 7, 2021 at 0:37
  • $\begingroup$ @RamRS I am using OB GUI. I opted for sdf as the input format for file conversion and pdb as the output file format for the conversion. $\endgroup$
    – ibio_rep1
    Mar 9, 2021 at 1:04
  • $\begingroup$ cheminfo.org/Chemistry/Cheminformatics/FormatConverter/… just to be sure people can try it $\endgroup$
    – pippo1980
    Mar 16, 2021 at 19:22
  • $\begingroup$ ouch multi molecules doesnt work online $\endgroup$
    – pippo1980
    Mar 16, 2021 at 19:44


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