I need to set the substitution matrix used by command line CLUSTALW when comparing DNA sequences to:
0 -1 -1 -1
-1 0 -1 -1
-1 -1 0 -1
-1 -1 -1 0
from my understanding I need to pass the location of a file with the matrix to the -dnamatrix
parameter, however, I cannot find out what format the file is supposed to be in. Any idea?