# Manta SV caller: I can't find a file in the path specified by the user guide

I trying to locally reproduce a Manta run as seen in the log of an illumina basespace RNA-Seq Alignment tool v1.1.1 run I've done. The log reads as follows:

[LOG][2021-03-12 20:58:56.377]03/12/2021,20:58:56.193,Launch process:  \
/path_to_RNA_Tools/bin/python  \
'/path_to_RNA_Tools/Manta/bin/configManta.py'  \
--rna --normalBam='path_to_alignments/alignments.bam' \
--runDir='path_to_samples/CTR/replicates/CTR/MantaFusions/manta.run'  \
--referenceFasta='/path_to_genomes/genome.fa' \
--config '/opt/illumina/Isis/2.6.25.18/Workflows/WholeGenomeRnaSeqWorker/scripts/configManta.py.ini'


The file shown in the line above configManta.py.ini is however no were to be found. The Manta user guide states in the linked section

Options listed in the file: \${MANTA_INSTALL_PATH}/bin/configManta.py.ini

The configManta.py is in the expected directory, only the configManta.py.ini is absent.

I am using Manta version 1.6.0 from bioconda.

Your insights will be much appreciated!

The --config file option for Manta can be used to override the defaults in the global config file. If you type configManta.py -h, you'll see where the global config file has been installed. For me, it's here:
/home/steve/miniconda3/envs/manta/share/manta-1.6.0-1/bin/configManta.py.ini

/opt/illumina/Isis/2.6.25.18/...