I have a snp information in an excel file and I used SNPstat to do some analysis. But I also need a plot of LD for these snps. But my file is not formatted as the most programs required (.ped, hapmap, Plink...). Here is a screen shot of file: Data file

I have also chromosome numbers and rs information for this snps. Due to this data format problem I couldn't use Haploview or other programs. Can you suggest me a solution to create a LD graph?



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