0
$\begingroup$

I have a snp information in an excel file and I used SNPstat to do some analysis. But I also need a plot of LD for these snps. But my file is not formatted as the most programs required (.ped, hapmap, Plink...). Here is a screen shot of file: Data file

I have also chromosome numbers and rs information for this snps. Due to this data format problem I couldn't use Haploview or other programs. Can you suggest me a solution to create a LD graph?

$\endgroup$
2

0

Your Answer

By clicking “Post Your Answer”, you agree to our terms of service and acknowledge you have read our privacy policy.

Browse other questions tagged or ask your own question.