I have a snp information in an excel file and I used SNPstat to do some analysis. But I also need a plot of LD for these snps. But my file is not formatted as the most programs required (.ped, hapmap, Plink...). Here is a screen shot of file: 
I have also chromosome numbers and rs information for this snps. Due to this data format problem I couldn't use Haploview or other programs. Can you suggest me a solution to create a LD graph?
