I am an undergrad working on a set of genotype matrix of dogs, it's in csv file format with information on only the each sample as rows, chromosome and its position as columns, and the rest of the matrix is filled with 0,1,2 and missing values.
So I am wondering what would be the best method to impute the genotype with all the data I get? I looked up Impute2, but it seems to require the reference data(recombination map) which I don't have...
Really appreciate whoever answers my question!!