I'm new to bioinformatics, and I'm looking for a tool that takes two FASTA files, one containing a reference, let's call it
A.fasta, the other another sequence, let's call it
B.fasta, and outputs just the mutations that
B contains with respect to
I'm open as to the output format. Is there a standard for this?
Background: I'm trying to analyse Sars-CoV-2 sequences and identify mutations with respect to the reference. I've done a google search for a tool that does what I want to but couldn't find something straightaway. Is there no standard tool for this?