0
$\begingroup$

I am new in R sorry for the naive question. I want to generate the seqlogo for each position using R. Can anyone guide me? Thank you so much in advance.

1  GATGGGGTGGGCAACTTAGAACTT
2  ATAACTGT
3  CAGAGGCGAACT
4  GGGCTAGGG
5  GGGGGGTGGCAGCACTAGC
6  GGGTAATATG
7  GTCGAGCGGT

Best

$\endgroup$

1 Answer 1

3
$\begingroup$

It's good practice to google before asking on online forums. Searching for "r seqlogo" pointed me to the seqLogo BioConductor package, which might be really helpful to you: https://bioconductor.org/packages/release/bioc/vignettes/seqLogo/inst/doc/seqLogo.html

You will need your sequences aligned though.

$\endgroup$

Your Answer

By clicking “Post Your Answer”, you agree to our terms of service and acknowledge that you have read and understand our privacy policy and code of conduct.

Not the answer you're looking for? Browse other questions tagged or ask your own question.