1
$\begingroup$

Can we retrieve metadata (such as date of collection of sequence data, location, etc.) for a batch of 3953 GISAID accessions from the GISAID database? I am not very comfortable with GISAID. I am more comfortable with the NCBI database. Any help would be appreciated.

$\endgroup$
1
$\begingroup$

You can download the full db and and put out anything you want with your favourite scripting language.

To do so, you need to request an account first. Once you log in, scroll down to the bottom of the download options. There are 2 meta-data download options, pick what you need.

$\endgroup$
2
  • $\begingroup$ You need to request an account first. Once you can login scroll down to the bottom of the download options and there's 2 meta data download options, pick what U need. $\endgroup$ Jul 11 at 5:01
  • $\begingroup$ Well done, hope U won't mind I added it to your answer. $\endgroup$
    – Kamil S Jaron
    Jul 11 at 12:16

Your Answer

By clicking “Post Your Answer”, you agree to our terms of service, privacy policy and cookie policy

Not the answer you're looking for? Browse other questions tagged or ask your own question.