I have a Seurat object of four cancers and four controls
> colnames([email protected])
[1] "orig.ident" "nCount_RNA" "nFeature_RNA" "samples"
[5] "Condition" "Gender" "percent.mt" "nCount_SCT"
[9] "nFeature_SCT" "SCT_snn_res.0.75" "seurat_clusters" "SCT_snn_res.0.5"
> unique([email protected]$Condition)
[1] "control" "cancer"
>
I want to have a heat map of differentially expressed between cancers and controls like figure 3A
in this paper
https://www.frontiersin.org/articles/10.3389/fgene.2020.610682/full
Do you have any idea please how I can do that? I've looked at the integration tutorial, but can't find the heatmap in it.