10X scRNA-seq multiome's 3' poly-A capture (scRNA-seq+ATAC-seq) from PBMC
Using Seuratreference mapping, I mapped my scRNA-seq part on reference PBMC (for cell type annotation)
I have also tried Seurat zimuth shiny app
But likely just a few of my cells has been mapped on the reference
Please look at this
Do you think this because my data is multiome or something else is going wrong?
Please any body has some experience help me