# How to check if a fasta file and a GTF file fit and form a valid pair?

I'd like to know if there is a simple way to check the concordance between a GTF file and a fasta file (that I use as mapping reference) ?

It may be a dumb question, but I suspect discrepancies between my 2 files and I don't want to check this manually

• Answer to this specific question --> turn back to the person who provided me the GTF and complain ! :P Aug 11 '21 at 12:49

You might use agat_sq_filter_feature_from_fasta.pl from AGAT
 DESCRIPTION