I am trying to predict transmembrane protein using
tmhmm-2.0c. According to Package instruction, I have changed the path of perl inside the program like as following:
First i checked the location of perl
which perl /usr/bin/perl
Then I checked the version also to make sure it is above 5.
perl -v This is perl 5, version 16, subversion 3 (v5.16.3) built for x86_64-linux-thread-multi (with 44 registered patches, see perl -V for more detail) Copyright 1987-2012, Larry Wall
I have pasted the path (
/usr/bin/perl) in the
Run the cmd:
./tmhmm --short < /mnt/genome3/Lab_Users/Kishor/DISK_3/mnspt1/blood/rsem_outdir/blood.Trinity.RSEM.retained.clustered.fasta.transdecoder.pep > tmhmm.out
But I only received a blank folder. It will be great for me if I get any suggestions to solve the problem.