I am trying to do a synteny test for MHC genes in human and another mammalian organism
For this reason, I need to download all paralogs of rabbits from humans and then construct position the coordinates of paralog to test the synteny. However, I am unsure how to download the paralogs from Ensembl and how to perform this test?
My main aim is to research synteny between MHC genes of humans, rabbits and mice.
Any suggestions on how to do this or alternative bioinformatic methods on how to perform a synteny test would be highly appreciated!