I tried to install
vcf2maf following this tutorial from GitHub: https://github.com/mskcc/vcf2maf.
I get a repeat error when I try to test out vcf2maf using the code:
perl vcf2maf.pl --input-vcf tests/test.vcf --output-maf tests/test.vep.maf
The error message looks like this:
'''STATUS: Running VEP and writing to: tests/test.vep.vcf ERROR: Cannot find VEP script under: /Users/user/miniconda3/bin'''
Basically I followed every steps provided on the tutorial. Does anyone could help me find out what is going wrong?
I am working on macOS Monterey 12.2.1 with an Intel Core i5 processor.