0
$\begingroup$

I have downloaded a predicted structure from AlphaFold as a pdb file (https://alphafold.com/entry/O75376) and loaded it into Pymol (2.3.0). There is quite a large portion of the structure that was modelled with very low confidence (pLDDT < 50). Is there a way to select these regions in the structure so that I can assign a different representation to them? Thank you.

$\endgroup$
0

2 Answers 2

2
$\begingroup$

Answer from @matteo-ferla, converted from comment:

They are stored as b-factors. This is well described in the PyMol wiki.

[please edit to improve this answer, if possible]

$\endgroup$
-1
$\begingroup$

use: Spectrum b, Red_white_blue

$\endgroup$
1
  • $\begingroup$ It is not clear what this means. $\endgroup$ Jul 22, 2022 at 17:04

Your Answer

By clicking “Post Your Answer”, you agree to our terms of service and acknowledge you have read our privacy policy.

Not the answer you're looking for? Browse other questions tagged or ask your own question.