1
$\begingroup$

I'm an absolute beginner trying to solve this question "Align the trimmed and untrimmed reads using QuasR and plot alignment statistics, did the trimming improve alignments?"

I did trim the reads using the preprocessReads() function, now I want to align the output but the qAlign() only takes a samples file and genome file. however, my trimmed reads are two separate files how can I align them.

I asked google but I didn't find the answer

$\endgroup$
1
  • $\begingroup$ Please clarify your specific problem or provide additional details to highlight exactly what you need. As it's currently written, it's hard to tell exactly what you're asking. $\endgroup$
    – Community Bot
    May 14 at 16:33

1 Answer 1

0
$\begingroup$

The QuasR vignette tells you how to run it. The samples file should contain a list of your samples and fastq files.

$\endgroup$
1
  • $\begingroup$ As it’s currently written, your answer is unclear. Please edit to add additional details that will help others understand how this addresses the question asked. You can find more information on how to write good answers in the help center. $\endgroup$
    – Community Bot
    May 16 at 16:30

Your Answer

By clicking “Post Your Answer”, you agree to our terms of service, privacy policy and cookie policy

Not the answer you're looking for? Browse other questions tagged or ask your own question.