# Questions about CreateGeneActivityMatrix function in Seurat

Seurat V3 has a function CreateGeneActivityMatrix, which can convert ATAC peaks to gene-level's matrix.

Here is the prototype:

CreateGeneActivityMatrix(
peak.matrix,
annotation.file,
seq.levels = c(1:22, "X", "Y"),
include.body = TRUE,
upstream = 2000,
downstream = 0,
verbose = TRUE
)


Here are my questions:

1. I want to know what is the format of the first parameter peak.matrix ? For example, what are the row names of this matrix? (Is there a strict rule of the row names?)
2. The parameter seq.levels. Besides 1...22,X,Y , Can I add other chromosome ? like hs37d5