Where can I find databases for breast cancer mutations (SNPs & indels) phenotype, with chromosome, position, ref, alt, gene, clinical significance.

So far, I have only found the Clinvar database.

I need to extract data for breast cancer, in order to train a machine learning model that will be able to predict the pathogenicity of variants (benign, pathogenic etc).

So I did the extraction of data from clinvar vcf file (chromosome, ref, alt, clinical significance), but the clinvar data for breast cancer is very small.

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    $\begingroup$ Please clarify your specific problem or provide additional details to highlight exactly what you need. As it's currently written, it's hard to tell exactly what you're asking. $\endgroup$
    – Community Bot
    Jun 3, 2022 at 16:47

1 Answer 1


Do you mean this (a product of the BRCA Challenge project):


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