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I'd like to perform the annotation (1000genomes, COSMIC etc.) of my variants using SnpSift and SnpEff, however so far all I get are vcf files for separate chromosomes: http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/release/20130502/
I'd like to annotate my variants and then filter out common SNP's. What in your opinion is best annotation source and where can I get the file?
Do you mean Somatic Sequence Variants?,
if so, Table 1 inside the following full-text link: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5707196/
And additional information from my search--> Here's https://docs.google.com/document/d/1hVtgMYAtvDoUcigKx8OLDmongDRzDQAd/edit?usp=sharing&ouid=102408774767674945852&rtpof=true&sd=true
According to your answer I tried to get the files which might be useful regarding annotation:
