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I'd like to perform the annotation (1000genomes, COSMIC etc.) of my variants using SnpSift and SnpEff, however so far all I get are vcf files for separate chromosomes: http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/release/20130502/

I'd like to annotate my variants and then filter out common SNP's. What in your opinion is best annotation source and where can I get the file?

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Do you mean Somatic Sequence Variants?,

if so, Table 1 inside the following full-text link: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5707196/

And additional information from my search--> Here's https://docs.google.com/document/d/1hVtgMYAtvDoUcigKx8OLDmongDRzDQAd/edit?usp=sharing&ouid=102408774767674945852&rtpof=true&sd=true

enter image description here

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According to your answer I tried to get the files which might be useful regarding annotation:

enter image description here

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  • $\begingroup$ thanks a lot, how can you do all of that within 24 hrs? Congratulations! $\endgroup$ Commented Jun 15, 2022 at 9:50

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