I'm trying to run a snakefile for the first time with limited coding experience using salmon to index a reference genome. I'm not too sure what I'm doing wrong based on this error message.
Error: Building DAG of jobs...
MissingRuleException:
No rule to produce snakefile (if you use input functions make sure that they don't raise unexpected exceptions).
Code:
rule salmon_index:
input:
R1="sequences/*R1.fastq.gz",
R2="sequences/*R2.fastq.gz"
output:
Index="results/salmon_index"
shell:
"""
salmon index --threads 8 -t references/genome.fa.gz -i salmon_index
"""