I have used WGCNA by integrating several datasets which are processed in a similar way. Identified 17 modules, followed by performed pathway analysis with the genes present in those modules.
Among all the protein-coding genes,ncRNAs and other genes, I'm particularly interested in a specific lncRNA MALAT1
.
I found that MALAT1
is co-expressed with more than 800 genes in a module named blue
. I have few questions, can anyone please help me in this?
Questions:
I would like to check which are the closest co-expressed genes to
MALAT1
. How can I know that?Once I get the closest genes to
MALAT1
, I would like to make a network with those genes and MALAT1. How to do this network?