Does any one have a condensed NCBI reference seq database with all the gbff files, which covers mostly all the bacteria and archaea. The current NCBI ReqSeq contains more than 30,000 gbff files. I am looking for a much more curated refseq with less than 30K files in it.
1
-
$\begingroup$ Please add more context to this question to explain why you need a reduced refseq dataset. There are lots of different reasons for this, and those reasons will change how the reduction is carried out. $\endgroup$– gringer ♦Jan 27 at 19:00
Add a comment
|
1 Answer
$\begingroup$
$\endgroup$
proGenomes includes a collection of genomes that are representative of different types - https://progenomes.embl.de/download.cgi
Or Genome Updater could be used to filter on unique taxonomy IDs and genome completeness etc.