1
$\begingroup$

I have two NGS files from an NGS company corresponding to the sequencing data from a tumor sample as follows:

  • TB_7710391_R1.FASTQ.gz
  • TB_7710391_R2.FASTQ.gz

I have downloaded the genome for MCPyV as a file called “MCPYV_Sequence.fasta”

I have downloaded the Hg38 as a file called “hg_38.fa”

I have input the host genome as hg_38.fa, the viral genome as “ MCPYV_Sequence.fasta” and the sequence data as both FASTQ files.

I run the assembly in the cloud, and I receive back an error stating that the assembly as failed.

What am I doing wrong?

Improve this question
$\endgroup$
2
  • $\begingroup$ Please clarify your specific problem or provide additional details to highlight exactly what you need. As it's currently written, it's hard to tell exactly what you're asking. $\endgroup$
    – Community Bot
    Feb 11 at 23:28
  • 1
    $\begingroup$ This question needs more detail. What cloud service are you using? How are you using it? Why are you trying to do an assembly? What results are you looking for? $\endgroup$
    – gringer ♦
    Feb 12 at 19:19

0

Reset to default

Your Answer

By clicking “Post Your Answer”, you agree to our terms of service and acknowledge that you have read and understand our privacy policy and code of conduct.

Browse other questions tagged or ask your own question.