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I am attempting to build just the standard Kraken2 Database by using the following command:

kraken2-build --standard --threads 24 --db $DBNAME

I am returned the following error a few minutes building it:

rsync_from_ncbi.pl: unexpected FTP path (new server?) for 
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/762/265/GCF_000762265.1_ASM76226v1

Anyone know why this is happening?

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I have experienced the same issue yesterday and after trying the --use-ftp argument without luck (this is proposed as an alternative in the forums), I have downloaded the database from Kraken 2, KrakenUniq and Bracken indexes (ref).

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