JSMol, the molecular modelling software, requires PDB file format to work and render the graphics. Currently, I am writing an annotation software - backend in Perl - that takes in a .faa file (fasta amino acids). Is there any way or tool out there that can easily convert to a PDB file? Many of the tools out there do not seem to give what I need.
My workflow so far:
input.fna -> Bakta -> bakta.faa -> covert tool -> proteins.pdb -> JSMol
Essentially, a tool exists called pdb2fasta that takes a pdb file and converts to a fasta file but can’t seem to find a proper tool that does it the other way around.