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I used scanpy to do DE analysis for 2 conditions within a cluster. I set it up like shown here:

sc.tl.rank_genes_groups(adata, 'type', method='wilcoxon', groups=["A"], reference='B')

I want to confirm the directionality of the log fold change of the results so I would like to plot the average expression of a specific gene for group A and B within a specific cluster. How can I do that?

Thank you

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