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Is there a way to blast my proteins against all the TSA (Transcriptome Shotgun Assembly Sequence Database) belonging to a specific taxonomy using command line?

Thanks,
Marco

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  • $\begingroup$ This seems like an XY problem. Please add more detail to your question post, including information about the problem that you are trying to solve by doing this. Have you considered other approaches to discover the taxonomy of proteins? $\endgroup$
    – gringer
    Dec 19, 2023 at 6:14

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Just go to Blast here

  1. Click where is says Database go to Transcriptome Shotgun Assembly Sequence Database (TSA).

  2. Click where is says "Limited by" click organism and thereon specify the group of interest.

Thats it.

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    $\begingroup$ The OP wants to do this "using command line" though. And I haven't managed to find a good way to do that, personally, which is why I came up with that really complex workaround for a similar question. $\endgroup$
    – terdon
    Dec 18, 2023 at 16:10

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