I am using macs3 to detect regions with high number of reads, similar to macs3's goal - detect chip-seq peaks - as it has been used for long-reads data, I would like to ask how to determine if it is doing a proper call or detecting spuriously peaks. The peaks are analyzed through IGV visualization.

  • $\begingroup$ Can you please provide more context around your study, especially examples of outputs / peaks? It's hard to answer this without knowing what data you have. $\endgroup$
    – gringer
    Commented Jul 11 at 6:48


Your Answer

By clicking “Post Your Answer”, you agree to our terms of service and acknowledge you have read our privacy policy.

Browse other questions tagged or ask your own question.