I am using macs3 to detect regions with high number of reads, similar to macs3's goal - detect chip-seq peaks - as it has been used for long-reads data, I would like to ask how to determine if it is doing a proper call or detecting spuriously peaks. The peaks are analyzed through IGV visualization.
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$\begingroup$ Can you please provide more context around your study, especially examples of outputs / peaks? It's hard to answer this without knowing what data you have. $\endgroup$– gringer ♦Commented Jul 11 at 6:48
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