I was following a tutorial on "Tuxedo Genome Guided Transcriptome Assembly Workshop" and was wondering how to interpret the following:
From what I understand from 'Color Legends', the color blue represents something that is below normal and red represents something that is above normal.
Also, my understanding is that merged.gtf is the reconstructed transcript and genes.bed is the reference. They look to be similar for the most part, but seems to have breaks between. What's the appropriate way of interpreting this result?