So I'm basically so new to this that I'm just trying to find out what tools, methods, and keywords I should go look up by myself.
I have a unique strain of a bacteria.
I was given RNAseq data for this unique strain.
I want to analyze the RNAseq data, but I need an annotated genome to do that.
As a resource, I do have the annotated genome of the common lab strain.
The common strain should be pretty similar to the unique strain, but I don't know how similar.
Can anyone tell me what tools/methods might be applicable so I can go look them up?