I'm using CRCmapper on my data. There are several modules in the tool. I've used exactly instructed in the usage.
python CRCmapper.py -e MB12_noEncBlack_AllEnhancers.table.txt -b MB12.bam -g HG19 -f hg19-stdChr/ -s MB12_peaks.bed -n MB12 -o MB12/
Here is the error I got:
Warning: text mode turns off computation of q-values IDENTIFY TF-TF INTERACTIONS Traceback (most recent call last): File "CRCmapper.py", line 605, in <module> main() File "CRCmapper.py", line 593, in main graph = buildNetwork(projectFolder, projectName, candidateGenes, refseqToNameDict, motifConvertFile) File "CRCmapper.py", line 381, in buildNetwork target = refseqToNameDict[region] KeyError: 'AP1'
My expertise in python is very basic. I would be grateful if someone take a look at this error and suggest how to fix.
P.S. I contacted authors a long back, I didn't get any response.