I am having RNA-seq
data set for C.Elegans
. I do not know which annotation scientists used for naming the genes of it, but I need to search somehow for the ^ERCC
and ^mt-
genes like specified in the tutorial:
https://www.bioconductor.org/help/workflows/simpleSingleCell/
If I just implement grepl
search for the character
array of gene names that I have, I am always getting all values FALSE
as if there are no spike-in
s and mitochindrial genes.
Any suggestion would be greatly appreciated.
Sample gene name from the dataset: WBGene00023193