I am using prokka to annotate a bacterial genome:
Prokka is outputting a tab-separated file (called PROKKA_12142017.tsv) with differing numbers of elements in each row:
locus_tag ftype gene EC_number product BOFHCHGE_00001 CDS hypothetical protein BOFHCHGE_00002 CDS rdgB_1 220.127.116.11 dITP/XTP pyrophosphatase BOFHCHGE_00003 CDS hypothetical protein BOFHCHGE_00004 CDS hypothetical protein BOFHCHGE_00005 CDS hypothetical protein
Does anybody know how I can get round this to import into a dataframe in R?
Is there a way to ask prokka to add something in the gene column?