I have followed the steps here to install RATT, i.e.:
svn co "https://svn.code.sf.net/p/ratt/code/" ratt-code
However, when I check my installation by running '$RATT_HOME/start.ratt.sh', it says:
zsh: no such file or directory: /start.ratt.sh
which makes sense once I check that the RATT_HOME variable is empty.
I downloaded their tuberculosis example, went into that directory and ran:
~/path/to/my/ratt/ratt-code/start.ratt.sh embl F11.fasta F11 SimStrain
and got the following output:
Please set the RATT_HOME variable. At Sanger for bash it is RATT_HOME=/nfs/users/nfs_t/tdo/Bin/ratt; export RATT_HOME At Sanger for tcsh setenv RATT_HOME /nfs/users/nfs_t/tdo/Bin/
What should I set my RATT_HOME variable to? The message only says what it should be set to at the Sanger Institute.