I am working on big networks of genes. I want to locate KEGG/Reactome pathways in my network. I have already tried cytoKegg and ReactomeFI (Plugins of Cytoscape), they only give me a list of Pathways with the genes in it. But I want to visually see the grouped genes from my network which belong to one pathway in either KEGG or Reactome.
My network file looks like this
ADAM17 NOTCH1 -> ADAM17 TNF -> ADAM17 TRAF6 -> ADRB2 GNAI1 -> ADRB2 GNAI2 -> AJUBA CDH1 <- AJUBA CTNNB1 <- AJUBA LATS2 -| AMOTL2 LATS2 -> AMPH EGF ->
I would like to see the genes in a pathway in KEGG or Reactome from my network to be either grouped together or colored. Is there any tool that does this?