I am trying to analyse the hydrophobicity of a sequence using BioPython's "SeqUtil".
analysed_seq = ProteinAnalysis("AKVLGSLEALEPVHYEEKNWCE") analysed_seq.protein_scale(Scale, WindowSize, Edge)
WindowSizerefers to the total number of amino acids to be considered either side of the residue (an
Edgerefers to the weighting of the scale further from the centre of the window (0-1). `
refers to which scale being used. I am interested in how to give theScale` variable a valid variable.
Where can I find a list of the
scale are available and how to call them?