Hello I am trying to create frequency plot for a motif with frequency unit on the Y axis from 0 -100 nt as the unit as represented in this paper.(Seiler et al., 2018)
Within weblogo, add the
--units probability argument and edit the figure with Illustrator (PDF/SVG) or Inkscape (SVG) to modify the y-axis, changing fractional probability (
[0,1]) to a percentage (
[0,100]) by multiplying by 100. Refer to the manual for more detail.