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I am searching for a plant metabolome or secondary metabolite database for a college bioinformatics project. Up until now, I have found these two databases, as I am giving their links below;

and searched for different scientific articles and reviews;

But only one and updated database which could contain all known plants and all of their known metabolites would be perfect. Could you suggest me any database or any other source with a high coverage for my project?

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  • $\begingroup$ Can you use the plant reactome db? plantreactome.gramene.org $\endgroup$
    – benn
    Apr 25, 2018 at 7:47
  • $\begingroup$ Do you really need to be all plants, and all metabolites? We don't have even for humans all the metabolites! Let alone know all plants, and from all have all the metabolites. Welcome to the site! Nice first question $\endgroup$
    – llrs
    Apr 25, 2018 at 9:22
  • $\begingroup$ Thank you for your suggestion @b.nota, I will check the db you shared :) $\endgroup$
    – niraito
    Apr 25, 2018 at 19:10
  • $\begingroup$ Thank you for your feedback @Llopis, I have meant all "known" plants and metabolites, could you recommend me any db with a coverage as high as possible? $\endgroup$
    – niraito
    Apr 25, 2018 at 19:10

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PhytoMine is an InterMine interface to data from Phytozome, the Plant Comparative Genomics portal of the Department of Energy's Joint Genome Institute, which hosts 81 assembled and annotation genomes, from 78 viridiplantae species.

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