I am trying to run UMAP
in the following way:
RunUMAP(seurat_object, dims.use = 1:15, reduction.use = "pca", reduction.name = "umap",
reduction.key = "UMAP", n_neighbors = 30L, min_dist = 0.3, metric = "correlation")
Or just this:
RunUMAP(seurat_object, dims.use = 1:15, reduction.use = "pca")
It is giving me the error:
Error in py_get_attr_impl(x, name, silent) : AttributeError: module 'umap' has no attribute 'UMAP'
I already installed umap-learn
successfully in this way: conda install -c conda-forge umap-learn
and checked that Rstudio
is using the same python
version as is provided by default in the terminal: 3.6.5