I'm interested in looking into cells that are positive for two (or in some cases more) genes. I know I have some double positive just by looking at the FeaturePlot of those genes, but now I'm trying to figure it out how many are double positive and further percentage wise. Example:
50 cells are positive for Myh11
100 cells are positive for Acta2
30 cells are double positive
60% of Myh11+ cells are Acta2+
30% of Acta2+ cells are Myh11+
Is the data used to generated the FeaturePlot the scale.data? If so, I could just make a new dataset out of that, but I'm not sure if that is the case.