I am trying to install psipred in a unix server.
Psipred is installed, but fails because it can not find the correct database files. I have downloaded uniprod90.fasta. Psipred also loads the old legacy ncbi BLAST-2.2.26 and BLAST+.
runpsipredplus have been patched to call the correct version of BLAST.
I have run a few commands to index the uniprod90 database:
pfilt uniref90.fasta > uniref90filt formatdb -t uniref90filt -i uniref90filt makeblastdb -in uniref90.fasta -dbtype prot -input_type fasta -out uniref90.fasta
I then ran
psipred and got this error:
$ ./psipred/example/example.fasta Running PSI-BLAST with sequence ./psipred/example/example.fasta ... [blastpgp] WARNING: Unable to open uniref90.pin [blastpgp] WARNING: Unable to open uniref90.pin FATAL: Error whilst running blastpgp - script terminated!
makeblastdb created 26 pin files, but not uniref90.pin.