2
$\begingroup$

I m trying to align different sequences of length not greater than 50 bp. Could I incorporate additional information such as stacking energy, entropy, bonds etc as additional criteria in the alignment?

The sequences are very similar.

$\endgroup$
1
  • $\begingroup$ Welcome to the site. Did you some literature review? Which bonds are you referring to? Bonds between each pair of sequences? Or bonds within a sequence? I think it would be clearer if you explain what is your goal (and maybe it provides some key words to help find more information). $\endgroup$ – llrs Jul 25 '18 at 8:43

Your Answer

By clicking “Post Your Answer”, you agree to our terms of service, privacy policy and cookie policy

Browse other questions tagged or ask your own question.