I have installed hmmpress
on my Mac OS X. It is here:
which hmmpress
/Users/user/anaconda/bin/hmmpress
It is available in my root environment:
hmmpress -h
# hmmpress :: prepare an HMM database for faster hmmscan searches
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Usage: hmmpress [-options] <hmmfile>
Options:
-h : show brief help on version and usage
-f : force: overwrite any previous pressed files
I don't remember exactly how I installed it but I thought that I used conda because it is in the anaconda
folder. However, conda search hmmpress
returns no packages. I thought it could be part of the hmmer package
. Indeed, the hmmer package exists in the bioconda channel. However, if I try conda uninstall hmmer
, it says:
conda uninstall hmmer
Solving environment: failed
PackagesNotFoundError: The following packages are missing from the target environment:
- hmmer
Does anyone know how I can remove hmmpress
? I thought of rm -rf
the /Users/user/anaconda/bin/hmmpress
but it does not seem like a clean solution. There might be dependencies elsewhere that I could also get rid of.
hmmer
package (at least version 3 on OSX), so do aconda list | grep hmmer
and see if maybe it's hmmer2 that you have installed. $\endgroup$